Malaria · Drug comparison

Doxycycline vs Malarone for malaria

By Bidwell Cranage, APRN, FNP-C, Member, International Society of Travel Medicine · Clinically reviewed by Ashley Cranage, APRN, FNP-C · Reviewed June 18, 2026

Both work, and both cover chloroquine-resistant regions, so the choice comes down to cost, side effects, and how long you take it after the trip. Doxycycline is cheap but you continue it for 4 weeks after leaving and it makes your skin sun-sensitive. Malarone costs more but you only take it 7 days after, with fewer side effects. Budget and longer trips lean doxycycline; short trips, last-minute travel, and fewest side effects lean Malarone.

Side by side

DoxycyclineMalarone (atovaquone-proguanil)
Cost (generic)Often under $20About $40 to $90
Start before travel1 to 2 days before1 to 2 days before
Continue after travel4 weeks (longer commitment)7 days (short tail)
DosingOnce dailyOnce daily, with food
Main downsidesSun sensitivity, stomach upset, take upright with waterCost; avoid in severe kidney disease
Cannot use ifPregnant, on isotretinoin, allergic to tetracyclinesSevere kidney impairment, pregnant
CoverageChloroquine-resistant regionsChloroquine-resistant regions

The real deciders

The tail is the catch people miss

The single most common adherence failure with malaria pills is stopping too early. With doxycycline you must keep taking it for a full 4 weeks after you leave the malaria area, because the parasite can still emerge during that window. Malarone's 7-day tail is shorter precisely because it acts at an earlier stage. If you know you will forget a 4-week course once you are home, that alone is a reason to choose Malarone.

What about mefloquine?

Mefloquine is a third option (weekly dosing), but we do not prescribe it online, its neurologic and psychiatric cautions are not something a questionnaire can screen reliably. If a destination or budget points to mefloquine, that is a travel-clinic conversation.

Get either one online

Bidwell Health can review your trip and prescribe doxycycline or Malarone online when it is clinically appropriate, sent to your pharmacy.

$45 flat visitNo videoNo subscriptionSent to your pharmacyYou pay the generic price, nothing added

A $45 asynchronous visit (no video, no membership) for adults in eligible states. Tell us your destination and dates and we match the pill to your trip. Request it at least two weeks ahead when you can, since you start before you leave.

FAQ

Is doxycycline or Malarone better for malaria?

Both work and both cover chloroquine-resistant regions. Doxycycline is cheaper but you take it for 4 weeks after you leave the malaria area and it causes sun sensitivity. Malarone costs more but you only take it for 7 days after, with fewer side effects. Doxycycline suits budget and longer trips; Malarone suits short trips, last-minute travel, and people who want the fewest side effects.

How long do you take doxycycline vs Malarone after travel?

Doxycycline must be continued for 4 weeks after leaving the malaria area. Malarone is continued for only 7 days after. That shorter tail is one of Malarone's main advantages for short trips.

Which malaria pill is cheaper?

Doxycycline is cheaper, often under $20 generic. Generic Malarone (atovaquone-proguanil) usually runs about $40 to $90 depending on the pharmacy and trip length. Prices vary, so compare with GoodRx or Cost Plus Drugs.

Can I take doxycycline if I'm on isotretinoin (Accutane)?

No. Combining doxycycline with isotretinoin can raise pressure around the brain (pseudotumor cerebri). If you take isotretinoin, you should not use doxycycline for malaria; Malarone is the alternative, or see a travel clinic.

Start your $45 malaria visit ›

Related

Clinically reviewed by Bidwell Cranage, APRN, FNP-C, AANP board-certified Family Nurse Practitioner and Member, International Society of Travel Medicine.
Last reviewed: June 18, 2026 · References: CDC Yellow Book (Malaria); DailyMed doxycycline and atovaquone-proguanil labels. Prices verified June 2026 and vary by pharmacy, coupon, and trip length.