Malaria · Drug comparison

Doxycycline vs Malarone for malaria

Last updated:
Clinically reviewed by Ashley Cranage, APRN, FNP-C ·
By Bidwell Cranage, APRN, FNP-C, Member, International Society of Travel Medicine

Both can prevent malaria where recommended, but the right choice depends on the destination and your health. Doxycycline is often less expensive per tablet and continues for 28 days after leaving the risk area; sun sensitivity and stomach or esophageal irritation matter. Atovaquone-proguanil continues for 7 days afterward and is generally well tolerated, but severe kidney impairment can rule it out. Compare full-course cost and your medication interactions with the clinician.

Side by side

DoxycyclineMalarone (atovaquone-proguanil)
Cost (generic)Compare a full-course quoteCompare a full-course quote
Start before entering the malaria area1 to 2 days before1 to 2 days before
Continue after leaving the malaria area4 weeks (longer commitment)7 days (short tail)
DosingOnce dailyOnce daily, with food
Main downsidesSun sensitivity, stomach upset, take upright with waterCost; avoid in severe kidney disease
Cannot use ifPregnant, on isotretinoin, allergic to tetracyclinesSevere kidney impairment, pregnant
CoverageChloroquine-resistant regionsChloroquine-resistant regions

The real deciders

The tail is the catch people miss

Stopping early can leave you unprotected. Doxycycline continues for a full 28 days after leaving the malaria area; atovaquone-proguanil continues for 7 days. Discuss which schedule you can complete, but convenience alone does not determine whether a drug is safe for you.

What about mefloquine?

Mefloquine is another prevention option with weekly dosing and important neuropsychiatric and cardiac cautions. It is outside Bidwell’s service scope. A travel-medicine clinician can assess whether it or another option is appropriate; this is a service boundary, not a universal ban on remote prescribing.

Get either one online

Bidwell Health can review your trip and prescribe doxycycline or Malarone online when it is clinically appropriate, sent to your pharmacy.

$45 flat visitNo videoNo subscriptionSent to your pharmacyYou pay the generic price, nothing added

A $45 asynchronous visit (no video, no membership) for adults in eligible states. Tell us your destination and dates and we match the pill to your trip. Request it at least two weeks ahead when you can, since you start before you leave.

FAQ

Is doxycycline or Malarone better for malaria?

Neither is best for everyone. The clinician checks destination guidance, health, interactions and cost. Doxycycline has a 28-day after-exposure course and can cause sun sensitivity or esophageal irritation; atovaquone-proguanil has a 7-day course afterward and is not used for prevention with severe kidney impairment.

How long do you take doxycycline vs Malarone after travel?

Doxycycline must be continued for 4 weeks after leaving the malaria area. Malarone is continued for only 7 days after. That shorter tail is one of Malarone's main advantages for short trips.

Which malaria pill is cheaper?

Doxycycline is often cheaper per tablet, but it requires a longer after-travel course. Compare the full prescribed quantity of each drug, including shipping, before choosing. Drug choice also depends on destination, safety and interactions, not price alone.

Can I take doxycycline if I'm on isotretinoin (Accutane)?

No. Combining doxycycline with isotretinoin can raise pressure around the brain (pseudotumor cerebri). If you take isotretinoin, you should not use doxycycline for malaria; a clinician must assess an alternative such as atovaquone-proguanil, including its own contraindications.

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Related

Compare the full course, not one bottle

For an illustrative 7-day stay in a malaria area, starting 2 days before entry means 37 daily doses of doxycycline (2 + 7 + 28), or 16 daily doses of atovaquone-proguanil (2 + 7 + 7). These are planning examples, not prescriptions; your clinician confirms the medicine, dose and dates. CDC malaria prevention guidance.

Source details

CDC Yellow Book: malaria

Earlier clinical review by Bidwell Cranage, APRN, FNP-C, AANP board-certified Family Nurse Practitioner and Member, International Society of Travel Medicine.
Original review date: June 18, 2026 · References: CDC Yellow Book (Malaria); DailyMed doxycycline and atovaquone-proguanil labels. Prices verified June 2026 and vary by pharmacy, coupon, and trip length.